· Kevin Bolger · AI & Data
Linking Instrument Files to LIMS Records
The raw file exists. The LIMS record exists. Connecting them is the work that makes both useful.
Tag: LIMS
· Shannon Alliance · Life SciencesA LIMS Migration Blueprint: Transitioning a High-Throughput Genomics Lab from Legacy LabVantage to Cloud-Native QBench
How a high-throughput genomics lab moved from a self-hosted LabVantage and Oracle stack to QBench with zero downtime, five-figure annual savings, and CAP/CLIA-validated reporting.
· Shannon Alliance · Life SciencesWhy Querying the Database Directly is the Best Way to Do Data Engineering on On-Prem LabVantage LIMS
Query an on-prem LabVantage database with a read-only Python wrapper instead of Java extensions, so pipelines stay portable across Oracle and SQL Server.
· Shannon Alliance · Life SciencesContinuous CAP/CLIA Validation: Automating Integration Testing for Self-Hosted to SaaS LIMS Migrations
How a genomics lab stays CAP/CLIA validated across ad-hoc QBench releases with a full API regression suite and an audit PDF before each production update.
· Shannon Alliance · Life SciencesProductizing LIMS Data Transfer Agreements: How Regulated Labs Stop Burning Engineering Hours on Custom Exports
Treat client data transfer agreements as a priced menu, so custom LIMS exports stop consuming unpaid engineering time.
· Shannon Alliance · Life SciencesFrom Dark Data to Daily Insights: How BigQuery Transformed a Digital Pathology Lab
A digital pathology partner needed a regular count of samples stained with a given assay, and which analysis was paired with it. The answer lived in three systems.